If the script is not used, H5ToXDS should be installed as explained, and h5dump should be installed by e.g. vimdiff is also nice, and probably already installed.įor Eiger data processing, a h5dump binary (version 1.10 req'd for HDF5 data from DLS) and H5ToXDS is installed by the get_folder.sh script into /usr/local/bin. If Ubuntu 20.04 doesn't find it, use the latest from Īn xxdiff binary that runs on CentOS7 (RHEL7, SL7) is provided by the get_folder.sh script.Īlternatively, tkdiff may be installed, or other graphical comparison programs, like meld or kdiff3.
Xxdiff is likely available for your distribution - google for it, or try e.g.
#Hdf5 viewer for mac install#
On CentOS7, this would be yum -y install qt5-qtbase-gui qt5-qtbase. If the Qt5 libraries are missing, use sudo apt install libqt5gui5 libqt5printsupport5 libqt5opengl5. Sudo add-apt-repository -y ppa:rock-core/qt4 Ubuntu 20.04: if libQtOpenGL.so.4 is missing (for the Qt4 binary of XDSGUI), use Ubuntu 18.04: if libQtOpenGL.so.4 is missing, use sudo apt install libqt4-opengl. If in the case of Ubuntu you don't know the name of the package that provides a certain library, theĬommand should find it for you (where could e.g.
The output of which will tell you that this is in the libXfixes RPM.
Your friendly system administrator will then work out the specific commands to install those libraries.įor RedHat-type distributions, that would typically be e.g. Since XDSGUI depends on graphics packages that may need to be installed, you can check the xdsgui binary withĪnd that should show you the libraries it it didn't find. Nota bene: XDSGUI needs generate_XDS.INP unless you already have a working XDS.INP.
#Hdf5 viewer for mac update#
You may repeat this every now and then to update the programs.Īs root, the script copies the programs into /usr/local/bin/linux_bin, and links them to /usr/local/bin. A simple way to obtain them is to create an empty folder, "cd" to that folder and then Other programs: XDS-Viewer, XDSSTAT, XDSCC12, XDSGUI, XSCALE_ISOCLUSTER, spot2pdb, generate_XDS.INP In case the above website is unavailable, there is a backup site. If you are an academic user, as root (on Ubuntu, use "sudo -i" to become root) Log in as root - we need write permission for /usr/local/bin.
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